Type: Package
Package: AgeingError
Title: Estimating ageing error with 'TMB' from double reads
Version: 2.2.0
Date: 2026-06-16
Authors@R: c(
    person(c("Andre", "E."), "Punt", role = "aut",
           comment = c(ORCID = "0000-0001-8489-2488")),
    person(c("Kelli", "F."), "Johnson", role = "aut",
           comment = c(ORCID = "0000-0001-9563-1937")),
    person(c("James", "T."), "Thorson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-7415-1010")),
    person(c("Ian", "G."), "Taylor", , "ian.taylor@noaa.gov", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8489-2488")),
    person("Paul", "Burch", role = "aut",
           comment = c(ORCID = "0000-0002-9853-462X")),
    person(c("Ian", "J."), "Stewart", role = "ctb"),
    person(c("Melissa", "A."), "Haltuch", role = "ctb",
           comment = c(ORCID = "0000-0003-2821-1267"))
  )
Description: Implements Generalized Linear Mixed Effect Models (GLMMs)
        using TMB to estimate ageing error from double reads of
        otoliths.  The original analysis (Punt et al. 2008;
        <doi:10.1139/F08-111>) was written in ADMB and focused on
        estimating imprecision and bias. The newer version of the
        software allows for random effects using TMB.
License: GPL-3
URL: https://pfmc-assessments.github.io/AgeingError/
BugReports: https://github.com/pfmc-assessments/AgeingError/issues
Depends: R (>= 4.1.0)
Imports: cli, DiagrammeR, dplyr, fs, lifecycle, readr, stats, TMB (>=
        1.8.0)
Suggests: knitr, litedown, remotes, spelling, testthat (>= 3.0.0)
LinkingTo: RcppEigen, TMB
VignetteBuilder: litedown
ByteCompile: true
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
Config/testthat/parallel: true
Copyright: inst/COPYRIGHTS
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
SystemRequirements: GNU make, C++17
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev libx11-dev
Repository: https://noaa-fisheries-integrated-toolbox.r-universe.dev
Date/Publication: 2026-07-06 17:46:16 UTC
RemoteUrl: https://github.com/pfmc-assessments/AgeingError
RemoteRef: HEAD
RemoteSha: 5f2b75511731fb2b2a66610ae3698f4e21d28881
NeedsCompilation: yes
Packaged: 2026-07-06 19:02:34 UTC; root
Author: Andre E. Punt [aut] (ORCID: <https://orcid.org/0000-0001-8489-2488>),
  Kelli F. Johnson [aut] (ORCID: <https://orcid.org/0000-0001-9563-1937>),
  James T. Thorson [ctb, cph] (ORCID:
    <https://orcid.org/0000-0001-7415-1010>),
  Ian G. Taylor [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8489-2488>),
  Paul Burch [aut] (ORCID: <https://orcid.org/0000-0002-9853-462X>),
  Ian J. Stewart [ctb],
  Melissa A. Haltuch [ctb] (ORCID:
    <https://orcid.org/0000-0003-2821-1267>)
Maintainer: Ian G. Taylor <ian.taylor@noaa.gov>