{ "_id": "6a2524254b233be198391fd1", "Package": "Rpath", "Type": "Package", "Title": "R implementation of Ecopath with Ecosim", "Version": "1.1.0", "Authors@R": "c(\nperson(\"Kerim\", \"Aydin\", email = \"kerim.aydin@noaa.gov\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3792-9828\")),\nperson(\"Sean\", \"Lucey\", email = \"sean.m.lucey@noaa.gov\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-6675-5500\")),\nperson(\"Sarah\", \"Gaichas\", email = \"sgaichas@hydrascientificllc.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-5788-3073\")),\nperson(\"Sarah\", \"Weisberg\", email = \"sarahjweisberg@gmail.com\", role= \"aut\",\ncomment = c(ORCID = \"0000-0003-4271-9534\")),\nperson(\"Andy\", \"Whitehouse\",email = \"gaw@uw.edu\", role=\"aut\",\ncomment = c(ORCID = \"0000-0002-9130-9403\")),\nperson(\"Bia\", \"Dias\", email = \"bia.dias@noaa.gov\", role=\"ctb\",\ncomment = c(ORCID = \"0000-0001-5905-4044\")),\nperson(\"Ron\", \"Klasky\", email = \"ronald.klasky@noaa.gov\", role=\"ctb\"),\nperson(\"Andy\", \"Beet\", email = \"andrew.beet@noaa.gov\", role=\"ctb\",\ncomment = c(ORCID = \"0000-0001-8270-7090\")),\nperson(\"Max\", \"Grezlik\",email = \"maxwell.grezlik@noaa.gov\", role=\"ctb\")\n)", "Description": "This package implements the core mass balance equations\nmade popular by Ecopath with Ecosim. 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"concept": [ "Rpath functions" ], "topics": [ "rpath.gears" ] }, { "page": "rpath.groups", "title": "Rpath functional group names", "concept": [ "Rpath functions" ], "topics": [ "rpath.groups" ] }, { "page": "rpath.living", "title": "List of Rpath living groups", "concept": [ "Rpath functions" ], "topics": [ "rpath.living" ] }, { "page": "rpath.mixotrophs", "title": "List of Rpath mixotroph groups", "concept": [ "Rpath functions" ], "topics": [ "rpath.mixotrophs" ] }, { "page": "rpath.producers", "title": "List of Rpath producer groups", "concept": [ "Rpath functions" ], "topics": [ "rpath.producers" ] }, { "page": "rpath.stanzas", "title": "Calculate biomass and consumption for multistanza groups", "concept": [ "Rpath functions" ], "topics": [ "rpath.stanzas" ] }, { "page": "rsim.deriv", "title": "Calculate the derivatives for a time step", "topics": [ "rsim.deriv" ] }, { "page": "rsim.diet", "title": "Output consumption of each prey by an individual predator group from Rsim run", "topics": [ "rsim.diet" ] }, { "page": "rsim.fishing", "title": "Initialize fishing matrix for Rsim scenario", "topics": [ "rsim.fishing" ] }, { "page": "rsim.forcing", "title": "Initialize forcing matrix for Rsim scenario", "topics": [ "rsim.forcing" ] }, { "page": "rsim.mort", "title": "Output biomass removed by each predator for an individual prey group from Rsim run", "topics": [ "rsim.mort" ] }, { "page": "rsim.params", "title": "Initial set up for Rsim dynamic simulation", "concept": [ "Rsim functions" ], "topics": [ "rsim.params" ] }, { "page": "rsim.plot", "title": "Plot routine for Rsim runs", "concept": [ "Rsim functions" ], "topics": [ "rsim.plot" ] }, { "page": "rsim.run", "title": "Run a dynamic simulation", "concept": [ "Rsim functions" ], "topics": [ "rsim.run" ] }, { "page": "rsim.scenario", "title": "Specify a dynamic simulation scenario", "concept": [ "Rsim functions" ], "topics": [ "rsim.scenario" ] }, { "page": "rsim.sense", "title": "Ecosense function for Rpath", 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