{ "_id": "6a319e4c3efcd9bda436e58b", "Package": "wham", "Title": "Woods Hole Assessment Model (WHAM)", "Version": "2.1.0.9006", "Authors@R": "c(\nperson(\"Tim\", \"Miller\", role = c(\"aut\", \"cre\"),\nemail = \"timothy.j.miller@noaa.gov\",\ncomment = c(ORCID = \"0000-0003-1411-1206\")),\nperson(\"Brian\", \"Stock\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-2393-6747\")),\nperson(\"Liz\", \"Brooks\", role = c(\"ctb\"),\nemail = \"liz.brooks@noaa.gov\"),\nperson(\"Chris\", \"Legault\", role = c(\"ctb\"),\nemail = \"chris.legault@noaa.gov\"),\nperson(\"Jim\", \"Thorson\", role = c(\"ctb\"),\nemail = \"james.thorson@noaa.gov\"))", "Description": "The Woods Hole Assessment Model (WHAM) is a general\nage-structured stock assessment framework that can be\nconfigured to estimate assessment models that range in\ncomplexity from statistical catch-at-age (SCAA) model with\nannual recruitments as fixed effects, to state-space,\nmulti-stock, multi-region, age-structured models where many\nparameters can be treated as time- and age-varying process\nerrors and/or allowing effects of environmental covariates.\nWHAM is a generalization of code from Miller et al. (2016),\nMiller and Hyun (2018), and Miller et al. (2018). WHAM also has\nmany similarities of input data sources with ASAP (Legault and\nRestrepo 1999) and provides functions to generate a WHAM input\nfile from an ASAP3 dat file, although this is not a\nrequirement. Many of the plotting functions for input data,\nresults, and diagnostics have modified from code written by\nChris Legault and Liz Brooks.", "Remotes": [ "kaskr/adcomp/TMB" ], "URL": "https://timjmiller.github.io/wham/,\nhttps://github.com/timjmiller/wham,\nhttps://doi.org/10.1016/j.fishres.2021.105967,\nhttps://doi.org/10.1139/cjfas-2025-0097", "BugReports": "https://github.com/timjmiller/wham/issues", "License": "GPL-3", "LazyData": "true", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev\nlibuv1-dev libxml2-dev", "Repository": "https://noaa-fisheries-integrated-toolbox.r-universe.dev", "Date/Publication": "2026-06-16 13:45:24 UTC", "RemoteUrl": "https://github.com/timjmiller/wham", "RemoteRef": "HEAD", "RemoteSha": "3b16618f8de5ac7b5f0b6dc63dd6b4c359e717fc", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-16 18:14:20 UTC", 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