Package: FIMS 0.2.0.0

Christine Stawitz

FIMS: The Fisheries Integrated Modeling System

The Fisheries Integrated Modeling System is a next-generation framework of stock assessment models, assisting fishery managers with the goal of achieving sustainable fisheries. This system, when completed in a few years, offers the NOAA Fisheries and global fisheries science communities an advanced set of stock assessment models. These tools can be used separately or in combination to incorporate ecosystem and socioeconomic data and models, as well as climate effects and other drivers within the marine environment, into stock assessment models.

Authors:Christine Stawitz [aut, cre], Nathan Vaughan [aut], Howard Townsend [aut], Ian G. Taylor [aut], Matthew Supernaw [aut], Jane Sullivan [aut], Kyle Shertzer [aut], Megumi Oshima [aut], Cole C. Monnahan [aut], Timothy J. Miller [aut], Richard Methot [aut], Patrick Lynch [aut], Bai Li [aut], Huihua Lee [aut], Christopher M. Legault [aut], Kelli F. Johnson [aut], James N. Ianelli [aut], Alan Haynie [aut], Andrea M. Havron [aut], Kathryn L. Doering [aut], Edward J. Dick [aut], Jon Brodziak [aut], Kristan Blackhart [aut], Peter Kuriyama [aut]

FIMS_0.2.0.0.tar.gz

FIMS_0.2.0.0.tgz(r-4.4-x86_64)FIMS_0.2.0.0.tgz(r-4.4-arm64)FIMS_0.2.0.0.tgz(r-4.3-x86_64)FIMS_0.2.0.0.tgz(r-4.3-arm64)
FIMS_0.2.0.0.tar.gz(r-4.5-noble)FIMS_0.2.0.0.tar.gz(r-4.4-noble)
FIMS_0.2.0.0.tgz(r-4.4-emscripten)FIMS_0.2.0.0.tgz(r-4.3-emscripten)
FIMS.pdf |FIMS.html
FIMS/json (API)
NEWS

# Install 'FIMS' in R:
install.packages('FIMS', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/noaa-fims/fims/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • data_mile1 - FIMS input data frame for milestone 1

On CRAN:

7.11 score 16 stars 20 scripts 25 exports 35 dependencies

Last updated 4 months agofrom:f0d4e766dd. Checks:OK: 1 WARNING: 5. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 24 2024
R-4.5-linux-x86_64WARNINGOct 24 2024
R-4.4-mac-x86_64WARNINGOct 24 2024
R-4.4-mac-aarch64WARNINGOct 24 2024
R-4.3-mac-x86_64WARNINGOct 24 2024
R-4.3-mac-aarch64WARNINGOct 24 2024

Exports:AgeCompBevertonHoltRecruitmentclearclear_logsCreateTMBModelDoubleLogisticSelectivityEWAAgrowthFIMSFrameFleetget_fixedget_randomIndexLogisticMaturityLogisticSelectivitym_agecompm_indexm_landingsParameterPopulationrun_gtestsetup_and_run_gtestsetup_gtestTMBDlnormDistributionTMBDmultinomDistributionTMBDnormDistribution

Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalestibbletidyselectTMButf8vctrsviridisLitewithr

FIMS Path: Maturity

Rendered fromfims-path-maturity.Rmdusingknitr::rmarkdownon Oct 24 2024.

Last update: 2023-11-28
Started: 2023-07-11

Fisheries Integrated Modeling System (FIMS) Documentation

Rendered fromfims-documentation.Rmdusingknitr::rmarkdownon Oct 24 2024.

Last update: 2024-06-18
Started: 2024-06-17

Introducing the Fisheries Integrated Modeling System (FIMS)

Rendered fromfims-demo.Rmdusingknitr::rmarkdownon Oct 24 2024.

Last update: 2024-06-12
Started: 2023-07-11