Making a spatial grid fileUpdated 2 days ago

Paul Carvalho

Rendered from making_a_spatial_grid.Rmd in FishSET 1.1.0.
Scallop ExampleUpdated 30 days ago

Lisa Pfeiffer

Rendered from scallop-example.Rmd in FishSET 1.1.0.
Create your own likelihood functionUpdated 2 months ago

Paul Carvalho

Rendered from likelihood-template.Rmd in FishSET 1.1.0.
Getting started with mizerUpdated 3 months ago

Gustav Delius

Rendered from mizer_vignette.Rmd in mizer 2.5.3.9002.
Introduction to r4ssUpdated 4 months ago

Ian G. Taylor and Kathryn L. Doering

Rendered from r4ss-intro-vignette.Rmd in r4ss 1.51.0.
FishSET GUI Quickstart GuideUpdated 5 months ago

Lisa Pfeiffer

Rendered from FishSET_GUI_Quickstart_Guide.Rmd in FishSET 1.1.0.
Create a static food web model in RpathUpdated 8 months ago

Vignette Author

Rendered from RunRpath.Rmd in Rpath 0.9.1.
Generating an Rsim ensemble with EcosenseUpdated 8 months ago

George A. Whitehouse

Rendered from ecosense.Rmd in Rpath 0.9.1.
Rpath: an open source food web modelUpdated 8 months ago

Sean M. Lucey

Rendered from Rpath.Rmd in Rpath 0.9.1.
Run a dynamic food web simulation in RsimUpdated 8 months ago

Sean M. Lucey

Rendered from RunRsim.Rmd in Rpath 0.9.1.
Set up a food web modelUpdated 8 months ago

Vignette Author

Rendered from ModelSetup.Rmd in Rpath 0.9.1.
Unit TestsUpdated 8 months ago

Ron Klasky

Rendered from UnitTests.Rmd in Rpath 0.9.1.
Additional steps for setting up workflows for your R packageUpdated 8 months ago

Kathryn Doering

Rendered from set_up.Rmd in ghactions4r 0.2.0.
Scallop Conditional Logit Model ExampleUpdated 9 months ago

Bryce McManus

Rendered from scallop-mod-example.Rmd in FishSET 1.1.0.
FishSET R package functionsUpdated 9 months ago

Lisa Pfeiffer

Rendered from FishSET_FunctionList.Rmd in FishSET 1.1.0.
Comparison with other packagesUpdated 12 months ago

James T. Thorson and Wouter van der Bijl

Rendered from comparison.Rmd in phylosem 1.1.4.
Demonstration of selected featuresUpdated 12 months ago

James T. Thorson

Rendered from demonstration.Rmd in phylosem 1.1.4.
Detailed comparison with phylopathUpdated 12 months ago

Wouter van der Bijl

Rendered from phylopath.Rmd in phylosem 1.1.4.
Phylogenetic comparative methods in fisheries scienceUpdated 12 months ago

James T. Thorson

Rendered from fisheries.Rmd in phylosem 1.1.4.
Overview of the bayesdfa packageUpdated 1 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a1_bayesdfa.Rmd in bayesdfa 1.3.3.
EM_DerivationUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from EMDerivation.Rnw in MARSS 3.11.9.
Learning MARSSUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Learning_MARSS.Rmd in MARSS 3.11.9.
Quick Start GuideUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Quick_Start.Rmd in MARSS 3.11.9.
ResidualsUpdated 2 years ago

Elizabeth Eli Holmes

Rendered from Residuals.Rnw in MARSS 3.11.9.
Combining data with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a2_combining_data.Rmd in bayesdfa 1.3.3.
Estimating process trend variability with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a5_estimate_process_sigma.Rmd in bayesdfa 1.3.3.
Examples of fitting DFA models with lots of dataUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a7_bigdata.Rmd in bayesdfa 1.3.3.
Examples of fitting smooth trend DFA modelsUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a4_smooth.Rmd in bayesdfa 1.3.3.
Examples of including covariates with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a3_covariates.Rmd in bayesdfa 1.3.3.
Fitting compositional dynamic factor models with bayesdfaUpdated 2 years ago

Eric J. Ward, Sean C. Anderson, Mary E. Hunsicker, Mike A. Litzow, Luis A. Damiano, Mark D. Scheuerell, Elizabeth E. Holmes, Nick Tolimieri

Rendered from a6_compositional.Rmd in bayesdfa 1.3.3.
Example r4ss plotsUpdated 2 years ago

Ian G. Taylor

Rendered from example-plots.Rmd in r4ss 1.51.0.
Diagnosing errorsUpdated 2 years ago

Eric J. Ward, Jason E. Jannot

Rendered from a04_diagnosing_problems.Rmd in bycatch 1.0.7.
Spatial GLMs with glmmfieldsUpdated 2 years ago

Sean C. Anderson and Eric J. Ward

Rendered from spatial-glms.Rmd in glmmfields 0.1.8.
Dependency GraphUpdated 2 years ago

Kathryn Doering

Rendered from dependency_graph.Rmd in ghactions4r 0.2.0.
LHsampling_vignetteUpdated 2 years ago

Eva Schemmel

Rendered from LHsampling_vignette.Rmd in LHsampling 0.1.0.
MethodsUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from Methods.Rmd in NWCTrends 1.30.
Example codeUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from demo-code.Rmd in NWCTrends 1.30.
demo-dataUpdated 3 years ago

Elizabeth Holmes - NOAA Federal

Rendered from demo-data.Rmd in NWCTrends 1.30.
Expanding bycatch estimatesUpdated 4 years ago

Eric J. Ward, Jason E. Jannot

Rendered from a03_expanding_estimates.Rmd in bycatch 1.0.7.
Fitting models with the bycatch packageUpdated 4 years ago

Eric J. Ward, Jason E. Jannot

Rendered from a02_fitting_models.Rmd in bycatch 1.0.7.
Overview of bycatch packageUpdated 4 years ago

Eric J. Ward, Jason E. Jannot

Rendered from a01_overview.Rmd in bycatch 1.0.7.
Example analysis - Woodman et al 2019Updated 4 years ago

Samuel Woodman

Rendered from example-analysis.Rmd in eSDM 0.4.2.
No-U-turn sampling for ADMB modelsUpdated 4 years ago

Cole C. Monnahan

Rendered from adnuts.Rmd in adnuts 1.1.2.
User GuideUpdated 4 years ago

Elizabeth Eli Holmes

Rendered from UserGuide.Rnw in MARSS 3.11.9.