nwfsc-math-bio. To fix this you can add URL: https://noaa-fisheries-integrated-toolbox.r-universe.dev/NWCTrends to the package DESCRIPTION file. See also theR-universe documentation.Package: NWCTrends 1.31

NWCTrends: Standardized Trend Metrics for Salmonid Populations
This is runs the standardized trends metrics used in the 2016 and 2020 5-year NWFSC Viability Reports for listed PNW salmonids. To run, type library(NWCTrends) and then NWCTrends_report().
Authors:
NWCTrends_1.31.tar.gz
NWCTrends_1.31.zip(r-4.7)NWCTrends_1.31.zip(r-4.6)NWCTrends_1.31.zip(r-4.5)
NWCTrends_1.31.tgz(r-4.6-any)NWCTrends_1.31.tgz(r-4.5-any)
NWCTrends_1.31.tar.gz(r-4.7-any)NWCTrends_1.31.tar.gz(r-4.6-any)
NWCTrends_1.31.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
NWCTrends/json (API)
NEWS
| # Install 'NWCTrends' in R: |
| install.packages('NWCTrends', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nwfsc-math-bio/nwctrends/issues
Pkgdown/docs site:https://nwfsc-math-bio.github.io
marssnoaaprotected-speciessalmontime-series
Last updated from:9f5ba34900. Checks:7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 125 | ||
| source / vignettes | OK | 173 | ||
| linux-release-x86_64 | NOTE | 122 | ||
| macos-release-arm64 | NOTE | 110 | ||
| macos-oldrel-arm64 | NOTE | 106 | ||
| windows-devel | NOTE | 88 | ||
| windows-release | NOTE | 70 | ||
| windows-oldrel | NOTE | 71 | ||
| wasm-release | OK | 111 |
Exports:NWCTrends_report
Dependencies:base64encbslibcachemcellrangerclicpp11crayondigestevaluatefastmapfontawesomefsgenericsgluehighrhmshtmltoolsjquerylibjsonliteKFASknitrlatticelifecyclemagrittrMARSSmemoisemimemvtnormnlmepillarpkgconfigprettyunitsprogressR6rappdirsreadxlrematchrlangrmarkdownsassstringistringrtibbletinytexutf8vctrsxfunyaml
Example code
Rendered fromdemo-code.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2021-07-30
Started: 2021-07-06
demo-data
Rendered fromdemo-data.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2021-07-30
Started: 2021-07-06
Methods
Rendered fromMethods.Rmdusingknitr::rmarkdownon Jun 12 2026.Last update: 2021-08-19
Started: 2021-08-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Choose ESU | choose.esu |
| Lighter clean up population names | clean.mpg |
| Clean up population names | clean.pops |
| Read in the inputfile | data_setup |
| Figure of the raw and smoothed fracwild estimates. | fracwild_multipanel |
| Make average and geomean fraction wild tables | fracwild_table |
| Create the geomean tables | geomean_table |
| NWFSC PNW Salmonid Viability Report Table and Figures | NWCTrends_report |
| NWCTrends options and plot variables | nwctrends.options |
| Productivity plot | productivity_plot |
| Main figure of estimated trends (wild and total spawners) | Status_trendfigure_multipanel |
| data frame of estimated trends (wild and total spawners) | Status_trendfigure_multipanel_csv |
| Create the trend tables | trend_15_table |
| Fit a MARSS model and store in a list | trend_fits |
