Package: bycatch 1.0.7

Eric Ward

bycatch: Fit Bayesian Models to Bycatch Data

Fits models to bycatch data, and can expand to fleet-wide estimates, like in situations when fisheries are observed with less than 100% observer coverage.

Authors:Eric Ward [aut, cre], Jason Jannot [aut], Trustees of Columbia University [cph]

bycatch_1.0.7.tar.gz
bycatch_1.0.7.zip(r-4.5)bycatch_1.0.7.zip(r-4.4)bycatch_1.0.7.zip(r-4.3)
bycatch_1.0.7.tgz(r-4.4-x86_64)bycatch_1.0.7.tgz(r-4.4-arm64)bycatch_1.0.7.tgz(r-4.3-x86_64)bycatch_1.0.7.tgz(r-4.3-arm64)
bycatch_1.0.7.tar.gz(r-4.5-noble)bycatch_1.0.7.tar.gz(r-4.4-noble)
bycatch.pdf |bycatch.html✨
bycatch/json (API)

# Install 'bycatch' in R:
install.packages('bycatch', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ericward-noaa/bycatch/issues

Pkgdown site:https://ericward-noaa.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

4.08 score 3 stars 4 scripts 6 exports 55 dependencies

Last updated 7 months agofrom:c1e2c26af7. Checks:1 OK, 8 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 07 2025
R-4.5-win-x86_64NOTEJan 07 2025
R-4.5-linux-x86_64NOTEJan 07 2025
R-4.4-win-x86_64NOTEJan 07 2025
R-4.4-mac-x86_64NOTEJan 07 2025
R-4.4-mac-aarch64NOTEJan 07 2025
R-4.3-win-x86_64NOTEJan 07 2025
R-4.3-mac-x86_64NOTEJan 07 2025
R-4.3-mac-aarch64NOTEJan 07 2025

Exports:fit_bycatchget_expandedget_fittedget_totalplot_expandedplot_fitted

Dependencies:abindbackportsBHcallrcheckmateclicolorspacedescdistributionaldplyrfansifarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsscalesStanHeaderstensorAtibbletidyselectutf8vctrsviridisLitewithr

Diagnosing errors

Eric J. Ward, Jason E. Jannot

Rendered froma04_diagnosing_problems.Rmdusingknitr::rmarkdownon Jan 07 2025.

Last update: 2023-02-15
Started: 2023-02-15

Expanding bycatch estimates

Eric J. Ward, Jason E. Jannot

Rendered froma03_expanding_estimates.Rmdusingknitr::rmarkdownon Jan 07 2025.

Last update: 2021-07-09
Started: 2021-05-05

Fitting models with the bycatch package

Eric J. Ward, Jason E. Jannot

Rendered froma02_fitting_models.Rmdusingknitr::rmarkdownon Jan 07 2025.

Last update: 2021-05-08
Started: 2021-05-05

Overview of bycatch package

Eric J. Ward, Jason E. Jannot

Rendered froma01_overview.Rmdusingknitr::rmarkdownon Jan 07 2025.

Last update: 2021-05-08
Started: 2021-05-05