fishprior | Data | Filtering
This package is hidden from search results because it is not hosted in the universe of the upstream owner
noaa-fims. To fix this you can add URL: https://noaa-fisheries-integrated-toolbox.r-universe.dev/fishprior to the package DESCRIPTION file. See also theR-universe documentation.Package: fishprior 0.1.1.0
Kelli F. Johnson
fishprior: Get Priors for Life-History Traits of Fishes
This package extracts information the the rfishbase R package to inform priors for parameters that are commonly included in assessment models of marine resources. The parameters of interest are life-history parameters such as natural mortality but can also pertain to parameters that are fishery-related but have implausible values due to life-history traits such as selectivity parameters.
Authors:
fishprior_0.1.1.0.tar.gz
fishprior_0.1.1.0.zip(r-4.7-any)fishprior_0.1.1.0.zip(r-4.6-any)fishprior_0.1.1.0.zip(r-4.5-any)
fishprior_0.1.1.0.tgz(r-4.6-any)fishprior_0.1.1.0.tgz(r-4.5-any)
fishprior_0.1.1.0.tar.gz(r-4.7-any)fishprior_0.1.1.0.tar.gz(r-4.6-any)
fishprior_0.1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fishprior/json (API)
| # Install 'fishprior' in R: |
| install.packages('fishprior', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noaa-fims/fishprior/issues
Datasets:
- traits_example - Example trait information for three species
Last updated from:8fbb7fd057. Checks:2 NOTE, 7 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 533 | ||
| source / vignettes | OK | 347 | ||
| linux-release | OK | 519 | ||
| macos-release | OK | 745 | ||
| macos-oldrel | OK | 322 | ||
| windows-devel | NOTE | 281 | ||
| windows-release | OK | 887 | ||
| windows-oldrel | OK | 331 | ||
| wasm-release | OK | 97 |
Exports:check_rfishbase_versionget_dataget_distributionget_fishbase_traitsget_groupget_parametersget_traitget_typemake_informative_mortality_priormake_mortality_priorsummarize_fishbase_traitstranslate_trait_names
Dependencies:blobcachemclicpp11DBIdbplyrdplyrduckdbduckdbfsfarverfastmapfsgenericsggplot2gluegtableisobandlabelinglifecyclemagrittrmemoisepillarpkgconfigpurrrR6RColorBrewerrfishbaserlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithrxml2
Demonstration of the fishprior R package
Last update: 2026-10-06
Started: 2026-01-15
Meta-analyses with the fishprior R package
Combining estimates using sample sizes | Variance weighting | Model based weighting | Combining estimates using meta-analysis | Model 1: Known standard errors only | Model 2: Known standard errors with residual variance | Model 3: Known standard errors with residual variance and random effects
Last update: 2026-07-14
Started: 2026-01-15
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if the Installed Version of 'rfishbase' is Up to Date | check_rfishbase_version |
| Get information out of the prior class | get_ get_data get_data,prior-method get_distribution get_distribution,prior-method get_group get_group,prior-method get_parameters get_parameters,prior-method get_trait get_trait,prior-method get_type get_type,prior-method |
| Retrieve FishBase life-history trait data for species | get_fishbase_traits |
| Make a prior for the growth coefficient | make_growth_coefficient_prior |
| Make an information prior for natural mortality | make_informative_mortality_prior |
| Make a prior for natural mortality | make_mortality_prior |
| Summarize FishBase trait data into log-transformed traits | summarize_fishbase_traits |
| Example trait information for three species | traits_example |
| Change FishBase trait name to snake-case descriptions | translate_trait_names |