Package: AgeingError 2.1.1

Ian G. Taylor

AgeingError: Estimating ageing error with 'TMB' from double reads

Implements Generalized Linear Mixed Effect Models (GLMMs) using TMB to estimate ageing error from double reads of otoliths. The original analysis (Punt et al. 2008; <doi:10.1139/F08-111>) was written in ADMB and focused on estimating imprecision and bias. The newer version of the software allows for random effects using TMB.

Authors:Andre E. Punt [aut], Kelli F. Johnson [aut], James T. Thorson [ctb, cph], Ian G. Taylor [aut, cre], Paul Burch [aut], Ian J. Stewart [ctb], Melissa A. Haltuch [ctb]

AgeingError_2.1.1.tar.gz
AgeingError_2.1.1.zip(r-4.7)AgeingError_2.1.1.zip(r-4.6)AgeingError_2.1.1.zip(r-4.5)
AgeingError_2.1.1.tgz(r-4.6-x86_64)AgeingError_2.1.1.tgz(r-4.6-arm64)AgeingError_2.1.1.tgz(r-4.5-x86_64)AgeingError_2.1.1.tgz(r-4.5-arm64)
AgeingError_2.1.1.tar.gz(r-4.7-arm64)AgeingError_2.1.1.tar.gz(r-4.7-x86_64)AgeingError_2.1.1.tar.gz(r-4.6-arm64)AgeingError_2.1.1.tar.gz(r-4.6-x86_64)
AgeingError_2.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AgeingError/json (API)
NEWS

# Install 'AgeingError' in R:
install.packages('AgeingError', repos = c('https://noaa-fisheries-integrated-toolbox.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pfmc-assessments/ageingerror/issues

Pkgdown/docs site:https://pfmc-assessments.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

4.52 score 11 stars 9 scripts 22 exports 32 dependencies

Last updated from:846ff30ab0. Checks:11 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64ERROR287
linux-devel-x86_64ERROR138
source / vignettesOK364
linux-release-arm64ERROR210
linux-release-x86_64ERROR177
macos-release-arm64ERROR156
macos-release-x86_64ERROR375
macos-oldrel-arm64ERROR142
macos-oldrel-x86_64ERROR275
windows-develERROR185
windows-releaseERROR166
windows-oldrelERROR139
wasm-releaseOK140

Exports:ageing_comparisoncMxCreateDataCreateSpecsDoApplyAgeErrorestgrowth.vbfitload_dataload_specsminimizerplot_outputPlotOutputFnProcessResultsrMxrunRunFnSimulatorFnStepwiseFntally_repeatswrite_data_filewrite_fileswrite_specs_file

Dependencies:bitbit64clicliprcpp11crayondplyrfsgenericsgluehmslatticelifecyclemagrittrMatrixpillarpkgconfigprettyunitsprogressR6RcppRcppEigenreadrrlangtibbletidyselectTMBtzdbutf8vctrsvroomwithr

Estimating ageing error using the TMB model written by André Punt

Paul Burch and Ian Taylor based on documentation written by André Punt

Rendered fromgetting_started.Rmdusinglitedown::vignetteon Jun 13 2026.

Last update: 2025-05-01
Started: 2024-05-29